Publications

My full CV is here.
  • Tiago Paixão and Nicholas H. Barton (2016) "The effect of gene interactions on the long-term response to selection" PNAS 113(16): 4422-4427 [link]
  • Murat Tugrul, Tiago Paixão, Gasper Tkacik, Nicholas H. Barton (2015) "Dynamics of transcription factor binding site evolution" PLoS Genetics 11(11): e1005639 [link]
  • Tiago Paixão, Golnaz Badkobeh, Nick Barton, Dogan Cörüs, Duc-Cuong Dang, Tobias Friedrich, Per Kristian Lehre, Dirk Sudholt, Andrew M. Sutton, Barbora Trubenová (2015) "Toward a Unifying Framework for Evolutionary Processes" Journal of Theoretical Biology 383:28-43 [link]
  • Tiago Paixão, Jorge Pérez Heredia, Dirk Sudholt, and Barbora Trubenová (2015) "First Steps Towards a Runtime Comparison of Natural and Artificial Evolution" Proceedings of the Genetic and Evolutionary Computation Conference 1455-1463 [link] [arxiv]
  • Mirco Giacobbe, Calin C. Guet, Ashutosh Gupta, Thomas A. Henzinger, Tiago Paixão, Tatjana Petrov (2015) "Model Checking Gene Regulatory Networks" Proceedings of the 21st International Conference on Tools and Algorithms for the Construction and Analysis of Systems 469-483 [link] [arxiv]
  • Nicholas H. Barton, Sebastian Novak, and Tiago Paixão (2014) "Diverse forms of selection in evolution and computer science" PNAS 111(29): 10398-10399 [link]
  • Sujal S Phadke, Tiago Paixão, T Pham, S Pham, and Rebecca A. Zufall (2014) "Genetic background alters dominance relationships between mat alleles in the ciliate Tetrahymena thermophila" Journal of Heredity 105(1) 130-135 [link]
  • Hong-An Long, Tiago Paixão, Ricardo B. R. Azevedo, and Rebecca A. Zufall (2013) "Accumulation of Spontaneous Mutations in the Ciliate Tetrahymena thermophila" Genetics 195(2): 527-540 [link]
    • We made it to the cover of Genetics 
  • Tiago Paixão and Nicholas Barton (2013) "A Variance Decomposition Approach to the Analysis of Genetic Algorithms" Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation 845-852 [link] [pdf]
  • Nicholas Barton and Tiago Paixão (2013) "Can Quantitative and Population Genetics Help us Understand Evolutionary Computation?" Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation 1573-1580 
  • Tiago Paixão, Sujal Phadke, Ricardo BR Azevedo and Rebecca Zufall (2011) "Sex ratio evolution under probabilistic sex determination" Evolution 65(7): 2050-2060 [link]

  • Tiago Paixão and Ricardo BR Azevedo (2010) "Redundancy and the evolution of cis-regulatory element multiplicity" PLoS Computational Biology 6(7):e1000848 [link]

  • Tim F Cooper, Tiago Paixão and Jack A Heinemann (2010) "Within-host competition selects for plasmid-encoded toxin-antitoxin systems" Proceedings of the Royal Society B 277(1697): 3149-55 [link]

  • Ricardo BR Azevedo, Rolf Lohaus and Tiago Paixão (2008) "Networking Networks" Evolution and Development 10(5): 514-515 [link]

  • Tiago Paixão, Tiago P Carvalho, Dinis P Calado and Jorge Carneiro (2007) "Quantitative insights into stochastic monoallelic expression of cytokine genes" Immunology and Cell Biology 85: 315-322 [pdf] [link]

  • Jorge Carneiro, Kalet Leon, Íris Caramalho, Carline van den Dool, Rui Gardner, Vanessa Oliveira, Marie-Louise Bergman, Nuno Sepúlveda, Tiago Paixão, José Faro and Jocelyne Demengeot (2007) "When three is not a crowd: a Crossregulation Model of the dynamics and repertoire selection of regulatory CD4+ T cells" Immunological Reviews 216(1): 48-68 [pdf] [link] 

  • Dinis P Calado, Tiago Paixão, Dan Holmberg and Matthias Haury (2006) "Stochastic Monoallelic Expression of IL-10 in T Cells" The Journal of Immunology 177:5358-5364 [link]

  • Jorge Carneiro, Tiago Paixão, Dejan Milutinovic, João Sousa, Kalet Leon, Rui Gardner and José Faro (2005) "Immunological Self-Tolerance: Lessons from mathematical models" Journal of Computational and Applied Mathematics 184: 77-100 [pdf] [link]